SNIC Training News Letter
No 87, 14 March 2019
– Published 14 March 2019
Topics of this issue:
- Only a few seats left: Training course: “An introduction to parallel programming using Message Passing with MPI”, Gothenburg, 21 - 22 March 2019
- Seasonal School: “HPC for Life Sciences”, 10 - 13 June 2019, Stockholm
- Last chance: Training Course for PhD students: “CFD with OpenSource Software, 2019”, Gothenburg, starting 2 Sept 2019
- Training seminar: “C3SE Introductory Seminar” in Gothenburg, 26 March 2019, 15:15 - 17:00
- Training seminar: “Making your research data fit for a future of open science and open data” in Lund, 25 April 2019, 12:30 - 14:00
Training opportunities in Sweden, recommended by SNIC:
- Training courses in OpenFOAM at foundation and advanced level, Stockholm, 8 - 11 April, 2019
Attend training in the Nordics:
- Remark on the popular CodeRefinery Workshops
- CodeRefinery Training workshop: "Writing Reproducible and Sustainable Research Code”, Helsinki, Finland, 27-29 May 2019
- CodeRefinery Training workshop: "Writing Reproducible and Sustainable Research Code”, Oslo, Norway, 3-5 June 2019
- NeIC Nordic Training Calendar
Training overview:
- SNIC training webpage
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Only a few seats left: Training course: “An introduction to parallel programming using Message Passing with MPI”, Gothenburg, 21 - 22 March 2019
This event is almost fully booked. SNIC users interested students should register directly!
Message Passing is presently the most widely deployed programming model in massively parallel high performance computing. Message passing is suitable for programming a wide range of current computer architectures, ranging from multi-core desk top equipment to the fastest HPC systems in the world, offering several hundred thousand processing elements.
The course is at the beginners level and assumes no prior experience in parallel computing. The concepts behind message passing and distributed memory computing will be introduced and the syntax of the key MPI calls will be explained. The course will include point-to-point communications, non-blocking communication and the collective communications calls. Practical sessions to deepen the understanding of the lectures will be part of the course. At the end of the course participants should be able to write their own MPI programs at an intermediate level. The teaching language will be English.
For more information and registration, please see https://www.c3se.chalmers.se/news/mpi-2019/
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Seasonal School: HPC for Life Sciences, 10 - 13 June 2019, Stockholm
Molecular modelling and simulations are integral part of biomolecular research. Yet, there is insufficient expertise on efficient usage of HPC resources among the user community. We are bringing the core developers of GROMACS, NAMD, AMBER and VMD - some of the most popular and well-known applications in the field. Over the 4 days of the event, the school program will allow participants to get a comprehensive understanding of the usage of the different codes; their scalability and performance, as well as ways to avoid potential issues; and learn the best practices about using them on HPC systems. Extensive hands-on sessions will cover more than half of time during the school.
The school is jointly organised by PRACE and BioExcel and supported by SNIC.
For more information and registration see: https://events.prace-ri.eu/event/868/ Registration will open on 1st March 2019.
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Last Chance: Training Course for PhD students: “CFD with OpenSource Software, 2019”, Gothenburg, starting 2 Sept 2019
This event is almost fully booked. Students interested students should register directly!
The course gives an introduction to the use of OpenSource software for CFD applications. It has a strong focus on how to efficiently use the Linux operating system and different softwares that are useful for CFD (to the largest extent OpenFOAM), rather than having a focus on teaching the basics of CFD or fluid dynamics. A major project work in OpenFOAM forms a large part of the course. The project may be defined according to the student's special interests. The result of the project should be a detailed tutorial for a specific application or library of OpenFOAM (Docendo discimus – Latin: “by teaching, we learn”). The tutorials will be peer-reviewed by the students, and the tutorials thus form a part of the course. The tutorials will be made available, as a contribution to the OpenFOAM community. To pass the course the student must do the project and peer-review a tutorial from another project. There are also some compulsory assignments.
Organisation: Preparation and introduction at distance, three two-day occasions on-campus, project work at distance. Oral and written presentations, and a review process.
Credits: 7.5 hec
For more information visit the website: http://www.tfd.chalmers.se/~hani/kurser/OS_CFD/#YEAR_2019
Registration: Notification of interest by mail to hakan.nilsson@chalmers.se. Interested participants are entered into a mailing list for future communication. Final registration will be done later. SNIC PhD students should mention that they are SNIC users. There is a maximum number of attendees - register your interest as soon as possible.
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Training seminar: “C3SE Introductory Seminar” in Gothenburg, 26 March 2019, 15:15 - 17:00
The seminar describes how to work on the systems and introduces the provided toolset. Work management and best practices are also discussed. The event is intended for all new users, to get a comprehensive overview on the systems and how to get started with using them.
For more information and registration see: https://www.c3se.chalmers.se/
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Training seminar: “Making your research data fit for a future of open science and open data” in Lund, 25 April 2019, 12:30 - 14:00
Researchers are getting more and more demands on sharing their data. Demands are coming from funders, publishers, authorities, other researchers etc. How to share data? The FAIR Data Principles are supposed to guide researchers in how to share data in order to be F=findable, A=accessible, I=interoperable, R=re-usable.
The seminar will be an introduction to the FAIR Data Principles, which has grown in importance during the last years, among research communities, funders, research infrastructures. The seminar will also bring up practical tips and examples on what you can do as a researcher to make your data FAIR.
The seminar is offered in collaboration with the University Library of Lund University and will be held in English. The speaker is Maria Johnsson from the University Library.
For more information and registration visit: http://www.lunarc.lu.se/training/making-your-research-data-fit-for-a-future-of-open-science-and-open-data-25-april-2019/
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Training opportunities in Sweden, recommended by SNIC
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Training courses in OpenFOAM at foundation and advanced level, Stockholm, 8 - 11 April, 2019
As part of an industry collaboration with the ESI-Group, PDC is offering two training courses on OpenFOAM. One is at foundation level, the other is at an advanced level.
For information on the course and possibly discounted course fees, consult the following pages.
Foundation level course: https://www.pdc.kth.se/about/calendar/openfoam-training-foundation-level-1.873028?date=2019-04-08&orgdate=2019-02-07&length=1&orglength=0
Advanced level course: https://www.pdc.kth.se/about/calendar/openfoam-training-advanced-level-1.873036?date=2019-04-10&orgdate=2019-01-24&length=1&orglength=0
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Attend training in the Nordics:
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Remark on the popular CodeRefinery Workshops:
There are two CodeRefinery Training workshops in Sweden this spring, which filled up very quickly and are closed for registration. We advise SNIC users interested in this training to apply for the workshops in the Nordics, outside Sweden. We expect CodeRefinery to offer more workshops in Sweden after the summer.
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CodeRefinery Training workshop: "Writing Reproducible and Sustainable Research Code”, Helsinki, Finland, 27-29 May 2019
A three-day CodeRefinery workshop on best practices for writing research code will be held in Helsinki, Finland, on 27-29 May. The workshop is for students and researchers who write code in any programming or scripting language, at any level of complexity, but it does not teach specific languages nor how to use the Linux/Unix terminal shell. Instead the focus is on using modern tools and workflows to make coding easier and more structured, reproducible and collaborative.
Further information and registration details can be found on the course website:
There is a limited number of seats available for the workshop, so make sure to register early!
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CodeRefinery Training workshop: "Writing Reproducible and Sustainable Research Code”, Oslo, Norway, 3-5 June 2019
A three-day CodeRefinery workshop on best practices for writing research code will be held in Oslo, Norway, on 3-5 June. The workshop is for students and researchers who write code in any programming or scripting language, at any level of complexity, but it does not teach specific languages nor how to use the Linux/Unix terminal shell. Instead the focus is on using modern tools and workflows to make coding easier and more structured, reproducible and collaborative.
Further information and registration details can be found on the course website:
There is a limited number of seats available for the workshop, so make sure to register early!
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NeIC Nordic Training Calendar:
The NeIC Nordic Training Calendar gives an overview on eScience related training throughout the Nordics. Have a look at https://neic.no/training/#neic-training-calendar for an overview on training in Nordic partner countries that is typically accessible to Swedish academic research. The page also provides direct links to training portals of the national e-Science provides in the Nordics.
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SNIC training webpage
In addition to these news letters we also provide a SNIC training webpage: http://docs.snic.se/wiki/Training
This webpage currently gives an overview on all courses currently planed. It provides links to more information and the actual registration. The webpage also includes training which is expected to be mostly of interest to individual SNIC centres. Information will be added to this page as it becomes available.